|
About the PanPhlAn category
|
|
0
|
705
|
December 13, 2019
|
|
Panphlan code for details of Empirical growth rate estimation used in article
|
|
0
|
31
|
December 4, 2024
|
|
Pangenome generation
|
|
9
|
1771
|
January 17, 2024
|
|
Duplicated fasta entries in pangenomes
|
|
2
|
277
|
November 16, 2023
|
|
Either the species is not available or the name provided is incorrect
|
|
0
|
234
|
July 24, 2023
|
|
Panphlan database
|
|
0
|
318
|
November 23, 2022
|
|
Problem with panphlan_map
|
|
6
|
715
|
October 23, 2022
|
|
Meet "OSError: Invalid data stream" when using panphlan_profiling.py
|
|
3
|
1120
|
October 23, 2022
|
|
Functional Analysis
|
|
1
|
423
|
October 10, 2022
|
|
Inconsistent Format for Gene Start Positions in PanPhlAn Database
|
|
8
|
625
|
June 15, 2022
|
|
Missing samples - panphlan_profiling.py
|
|
1
|
478
|
May 31, 2022
|
|
Coverage Thresholds
|
|
1
|
474
|
May 31, 2022
|
|
Tutorial; guidance on vizualisation
|
|
4
|
1108
|
May 19, 2022
|
|
Duplicate entries in the contigs
|
|
0
|
300
|
May 13, 2022
|
|
Paired end fastq files as input for PanPhlAn
|
|
2
|
434
|
May 6, 2022
|
|
Missing sample from the panphlan profile step
|
|
9
|
394
|
April 28, 2022
|
|
Problems with panphlan_map.py
|
|
6
|
792
|
April 22, 2022
|
|
Finding out which genes drive varation seen between conditions
|
|
4
|
409
|
February 10, 2022
|
|
Panphlan Profiling Error
|
|
3
|
441
|
December 6, 2021
|
|
Multiple interrelated species (Streptococci) [reposting]
|
|
3
|
549
|
November 30, 2021
|
|
Minimum depth for PanPhlAn
|
|
9
|
639
|
November 8, 2021
|
|
Panphlan reference input
|
|
1
|
521
|
November 8, 2021
|
|
Appended headers in panphlan annotation files
|
|
3
|
391
|
August 27, 2021
|
|
Script for visualisation - BioBakery paper (Beghinin, 2021)
|
|
1
|
581
|
August 5, 2021
|
|
Input for Panphlan
|
|
2
|
448
|
July 22, 2021
|
|
PanPhlAn Identifier to Uniprot
|
|
2
|
450
|
July 12, 2021
|
|
Include Genome Sequences in PanPhlAn3
|
|
3
|
675
|
April 26, 2021
|
|
PanPhlAn_pangenome_exporter uniref uniref_annotator diamond issue
|
|
6
|
711
|
April 14, 2021
|
|
PanPhlAn threshold selection
|
|
6
|
1569
|
March 25, 2021
|
|
Panphlan duplicate sequences
|
|
2
|
585
|
March 15, 2021
|