I’m trying to use WAAFLE to analyse metagenomes. I successfully downloaded all the package requirements for the software and downloaded the actual software. I also successfully downloaded the database and unzipped it. However, the syntax to USE the database (as printed below) did not produce the output file.
$ waafle_search contigs.fna waafledb/waafledb
When I cd’d into the waafledb directory, I found there was no single file named “waffledb” as listed above. Instead I found a series of files with file extensions .nhr, .nsq., and .nin. Was the database not configured correctly?
Thanks in advance,