v3.1.1
If I have non-standard binary name or hasn’t binary at PATH, I also want to can create the config file. I am using phylophlan for the first time and yesterday the behavior of this script caused me a lot of pain. Until I let it go and simply removed the find_executable function from the script. So, I suggest embedding some kind of key (–force) that will allow generating a script despite errors in finding the path to programs.