Feature/Pull Request
Feature/Pull Request We welcome feedback and issue reporting for all bioBakery tools through our Discourse site. For users that would like to directly contribute to the tools we are happy to field PRs to address bug fixes. Please note the turn around time on our end might be a bit long to field these but that does not mean we don’t value the contribution! We currently don’t accept PRs to add new functionality to tools but we would be happy to receive your feedback on Discourse.
| Topic | Replies | Views | Activity | |
|---|---|---|---|---|
| Implement download resumption in `humann_databases` |
|
3 | 245 | November 21, 2023 |
| Reduce storage requirements when running HUMAnN |
|
1 | 301 | May 26, 2022 |
| Use nvBowtie instead of bowtie2 |
|
0 | 395 | May 27, 2022 |
| Add metaphlan database location to humann3 log file |
|
0 | 327 | July 19, 2022 |
| Performance of HUMAnN Custom Database Creation |
|
2 | 95 | June 20, 2024 |
| Check for downloaded db |
|
0 | 86 | March 20, 2024 |
| Support for SummarizedExperiment assays |
|
3 | 32 | January 31, 2025 |
| Multithreading blasting of unaligned reads |
|
1 | 28 | August 13, 2024 |
| FIX: metaphlan4 bowtie2-build --threads flag bug #229 |
|
0 | 28 | August 22, 2024 |
| KneadData setup.py update to URL reference for TRF.exe |
|
0 | 18 | November 11, 2024 |
| A question about the Intermediate results and abundance in MetaPhlAn |
|
0 | 4 | March 3, 2025 |