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MetaPhlAn 4 + HUMAnN 4 compatibility
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22
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1957
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March 27, 2026
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MetaPhlAn unrecognized argument --bowtie2out
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11
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640
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September 22, 2025
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HUMANN3.9 cannot recognize MetaPhlAn 4.2.2 output file
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11
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543
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April 1, 2026
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All associations had errors or were insignificant
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11
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185
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July 9, 2025
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Maaslin3 issue error message
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9
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220
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February 3, 2026
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Maaslin3 model runs but produce output with no results
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9
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151
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May 6, 2026
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Installing Baqlava
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19
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142
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April 14, 2026
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Merging results of metaphlan and humman tables for two batches of the same study (two different timepoints)
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10
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122
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January 25, 2026
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Unable to download Databases
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10
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62
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April 23, 2026
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Longitudinal analysis using Maaslin3
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9
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32
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June 5, 2026
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Humann 4 cant work with metaphlan 4
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1
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586
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June 30, 2025
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MetaPhlAn 4.2.2 work with humann v3.0.1
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8
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418
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October 22, 2025
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Compatibility of metaphlan4.0.3 output with human3.9
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1
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252
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August 1, 2025
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Getting humann and metaphlan to integrate
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0
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458
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August 6, 2025
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MaAsLin3 setup for multiple small and large random effects
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1
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230
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August 22, 2025
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HUMAnN4 Support for MetaPhlAn vJan25 Database
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2
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161
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June 4, 2026
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MaAsLin3 summary plot interpretation
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7
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525
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August 28, 2025
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HUMAnN 4(Alpha) less pathway generated and database filtering
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3
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368
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August 1, 2025
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Metaphlan 4 using with Humann3.9
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5
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518
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April 21, 2026
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How to deal with GGB and SGB species?
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7
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478
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September 25, 2025
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Maaslin3 ggplot2 labels error
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6
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436
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November 2, 2025
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Latest Stable version of HUMANn and MetaPhlAN for maximum downstream compatibility
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0
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181
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March 3, 2026
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R session aborted, R encountered a fatal error, the session was determined
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3
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453
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October 13, 2025
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Humann 3.9 conda install will not work. Please update your version of MetaPhlAn?
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6
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360
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March 9, 2026
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Interpretation of interaction terms
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4
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230
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February 5, 2026
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HUMAnN 4.2 for long read data
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7
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223
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September 6, 2025
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Trouble running HUMAnN with updated metaphlan database
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3
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303
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December 5, 2025
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Humann3 Database errors
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7
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210
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December 8, 2025
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Adding a --metaphlan-options and/or bowtie2db flag to baqlava
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2
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61
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December 4, 2025
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Minimap2 Database Files for MetaPhlAn 4.2.2
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7
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215
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November 20, 2025
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Dividing an abundance table for multiple Maaslin runs
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8
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103
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September 1, 2025
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Missing `mpa_vOct22_CHOCOPhlAnSGB_202403.tsv` in HUMAnN 4 utility_mapping database
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3
|
149
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February 16, 2026
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Connect Pathways to Uniref90 Gene Families IDs to Gene Families
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2
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253
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June 20, 2025
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Matching tools and database versions
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8
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170
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April 9, 2026
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Maaslin3 transformation and normaliazion fix
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3
|
227
|
November 17, 2025
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Pairwise comparisons with multi-level categorical variable in MaAsLin3
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5
|
180
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November 18, 2025
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I want to assign the variables I want for my heatmap
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7
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142
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November 29, 2025
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How to silence database download message from Metaphlan 4.0.6 within Humann 3.8
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4
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178
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December 7, 2025
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Lack of sensitivity of Maaslin3
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6
|
146
|
November 16, 2025
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Using humann4 with metaphlan4.2.2 profiles
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4
|
174
|
July 23, 2025
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Humann v3.8 misinterprets non-default analysis types, ie "-t rel_ab_w_read_stats", results from metaphlan 4.1
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4
|
108
|
August 28, 2025
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Maaslin2 "coef" interpretation
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2
|
211
|
July 23, 2025
|
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Question Regarding the Use of MaAsLin3 for Analyzing Differential Abundance/Prevalence of MetaCyc and GMM Metabolic Pathways
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4
|
174
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November 4, 2025
|
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Question on Running HUMAnN4 with Limited Memory on HPC
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3
|
176
|
August 1, 2025
|
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Problems running Humann
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2
|
111
|
September 25, 2025
|
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Prevotella copri clades in MetaPhlAn 4 results
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5
|
85
|
September 22, 2025
|
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StrainPhlan tutorial typo
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0
|
63
|
June 26, 2025
|
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Maaslin Analysis with Non-clinical data and Small samples
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5
|
137
|
October 7, 2025
|
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Strain taxonomic level Identification
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4
|
140
|
May 22, 2026
|
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Discrepancy Between Input Reads and Estimated Read Counts in MetaPhlAn 4
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3
|
148
|
July 10, 2025
|