|
LEfSe issues and errors
|
|
30
|
2832
|
April 24, 2024
|
|
Unable to access the Galaxy module of lefse
|
|
34
|
3308
|
April 17, 2024
|
|
Error in installing biobakery_workflows_databases
|
|
67
|
1447
|
October 27, 2023
|
|
Format input file for Lefse
|
|
33
|
1956
|
March 7, 2024
|
|
Metaphlan4 installation issues
|
|
9
|
1491
|
February 5, 2024
|
|
Updated kneaddata to fix issue with paired-end reads?
|
|
9
|
968
|
October 12, 2023
|
|
Cannot run humann v3.7 using the latest Chocophlan database
|
|
15
|
634
|
April 26, 2024
|
|
Error in Format Data for LEfSe
|
|
10
|
884
|
November 1, 2023
|
|
Issues downloading Metagenomics data
|
|
12
|
489
|
August 11, 2023
|
|
Protein database choose and low aligned rate in humann
|
|
13
|
316
|
September 5, 2023
|
|
LEfSe_run AttributeError
|
|
6
|
1328
|
June 10, 2023
|
|
Error in seq_length(ncol(features)): argument must be coercible to non-negative integer
|
|
0
|
1000
|
August 11, 2023
|
|
Galaxy Hutlab deprecation -Lefse?
|
|
1
|
1035
|
June 23, 2023
|
|
Galaxy Module Link Not working
|
|
1
|
337
|
September 14, 2023
|
|
Alternative ways to illustrate results
|
|
1
|
283
|
October 24, 2023
|
|
Abundance table output annotates surprisingly few taxa even after changing parameters
|
|
1
|
319
|
June 5, 2023
|
|
Cannot run Maaslin2 due to lpsymphony errors
|
|
1
|
488
|
May 8, 2023
|
|
Lefse commands in docker
|
|
1
|
454
|
October 20, 2023
|
|
No access to online LefSe
|
|
7
|
1386
|
October 25, 2023
|
|
Announcing MetaPhlAn 4.1 release (new virome database and SGB database update)
|
|
6
|
739
|
April 22, 2024
|
|
Photosynthetic pathways identified in human gut?
|
|
3
|
254
|
October 24, 2023
|
|
Announcing the MetaPhlAn 3.1 phylogenetic tree
|
|
1
|
644
|
May 5, 2023
|
|
CRITICAL ERROR: The directory provided for ChocoPhlAn contains files that are not of the expected version
|
|
5
|
905
|
August 18, 2023
|
|
Announcing HUMAnN 3.9
|
|
0
|
342
|
February 22, 2024
|
|
Maaslin2 changes the feature names
|
|
1
|
285
|
June 24, 2023
|
|
Appropriate rownames error (new error with version update)
|
|
4
|
1031
|
June 26, 2023
|
|
Unnable to acces galaxy.biobakery.org - Proxy Error
|
|
6
|
417
|
March 6, 2024
|
|
Question about calculate_diversity.R
|
|
4
|
525
|
March 8, 2024
|
|
Lefse input and normalization
|
|
0
|
329
|
July 12, 2023
|
|
Picrust2 using a Phyloseq object
|
|
2
|
1073
|
June 12, 2023
|
|
Tutorial: AttributeError: 'NoneType' object has no attribute 'rownames'AttributeError: 'NoneType' object has no attribute 'rownames'
|
|
2
|
1004
|
April 11, 2024
|
|
Error in MetaPhlAn installation
|
|
8
|
684
|
August 28, 2023
|
|
HUMAnN database download
|
|
6
|
329
|
April 1, 2024
|
|
Run HUMAnN 3 for producing Metaphlan 4's outputs
|
|
8
|
613
|
August 1, 2023
|
|
ValueError: Number of passed names did not match number of header fields in the file
|
|
3
|
749
|
March 5, 2024
|
|
StrainPhlan 4 tutorial issues
|
|
3
|
465
|
March 22, 2024
|
|
Lefse galaxy and conda codes
|
|
2
|
493
|
November 30, 2023
|
|
Can't access the Galaxy module LEfSe
|
|
2
|
533
|
October 13, 2023
|
|
What’s is needed to build a custom HUMANN database?
|
|
6
|
752
|
August 30, 2023
|
|
Is Humann3 comparable with Metaphlan4.0.6?
|
|
6
|
601
|
July 7, 2023
|
|
Humann biocontainer: Unable to write to the HUMAnN config file
|
|
2
|
564
|
May 4, 2023
|
|
Issue installing Humann3 via conda
|
|
4
|
766
|
June 23, 2023
|
|
Humann3 - Upgrading metaphlan v3.0 to v4.0.6 error
|
|
6
|
551
|
July 7, 2023
|
|
Error in kneaddata
|
|
6
|
515
|
August 3, 2023
|
|
NOTICE: PICRUSt forum questions
|
|
2
|
279
|
June 30, 2023
|
|
Inconsistent pathway stratification
|
|
4
|
178
|
March 11, 2024
|
|
Metaphlan genus level relative abundance not summing up to 100% and possible database problem
|
|
4
|
584
|
February 29, 2024
|
|
Issue with Format Data for LEfSe
|
|
2
|
818
|
June 23, 2023
|
|
MaAsLin 2 for longitudinal analysis with different individuals
|
|
6
|
496
|
October 25, 2023
|
|
Metaphlan4 error with hclust2.py
|
|
4
|
586
|
January 5, 2024
|