|
MetaPhlAn 4 + HUMAnN 4 compatibility
|
|
23
|
1789
|
March 27, 2026
|
|
MetaPhlAn unrecognized argument --bowtie2out
|
|
11
|
628
|
September 22, 2025
|
|
HUMANN3.9 cannot recognize MetaPhlAn 4.2.2 output file
|
|
11
|
512
|
April 1, 2026
|
|
All associations had errors or were insignificant
|
|
11
|
185
|
July 9, 2025
|
|
Maaslin3 issue error message
|
|
9
|
195
|
February 3, 2026
|
|
Maaslin3 model runs but produce output with no results
|
|
9
|
134
|
May 6, 2026
|
|
Merging results of metaphlan and humman tables for two batches of the same study (two different timepoints)
|
|
10
|
105
|
January 25, 2026
|
|
Installing Baqlava
|
|
19
|
123
|
April 14, 2026
|
|
Unable to download Databases
|
|
10
|
47
|
April 23, 2026
|
|
MetaPhlAn 4.2.2 release (initial long-read sequencing support and database update)
|
|
2
|
2162
|
June 11, 2025
|
|
Humann 4 cant work with metaphlan 4
|
|
1
|
569
|
June 30, 2025
|
|
MetaPhlAn 4.2.2 work with humann v3.0.1
|
|
8
|
409
|
October 22, 2025
|
|
Compatibility of metaphlan4.0.3 output with human3.9
|
|
1
|
242
|
August 1, 2025
|
|
HUMANn 4 + MetaPhlAn 4
|
|
7
|
1220
|
July 27, 2025
|
|
Getting humann and metaphlan to integrate
|
|
0
|
445
|
August 6, 2025
|
|
MaAsLin3 setup for multiple small and large random effects
|
|
1
|
222
|
August 22, 2025
|
|
MaAsLin3 summary plot interpretation
|
|
7
|
488
|
August 28, 2025
|
|
Reaction to Pathways
|
|
1
|
160
|
June 13, 2025
|
|
HUMAnN 4(Alpha) less pathway generated and database filtering
|
|
3
|
350
|
August 1, 2025
|
|
How to deal with GGB and SGB species?
|
|
7
|
448
|
September 25, 2025
|
|
Metaphlan 4 using with Humann3.9
|
|
5
|
469
|
April 21, 2026
|
|
Maaslin3 ggplot2 labels error
|
|
6
|
411
|
November 2, 2025
|
|
HUMAnN4 Support for MetaPhlAn vJan25 Database
|
|
1
|
132
|
January 9, 2026
|
|
R session aborted, R encountered a fatal error, the session was determined
|
|
3
|
435
|
October 13, 2025
|
|
Latest Stable version of HUMANn and MetaPhlAN for maximum downstream compatibility
|
|
0
|
151
|
March 3, 2026
|
|
Interpretation of interaction terms
|
|
4
|
219
|
February 5, 2026
|
|
Humann 3.9 conda install will not work. Please update your version of MetaPhlAn?
|
|
6
|
330
|
March 9, 2026
|
|
MaAsLin2 for Differential Abundance Analysis in a Repeated Measures Microbiome Study with Multiple Covariates
|
|
2
|
340
|
September 26, 2025
|
|
HUMAnN 4.2 for long read data
|
|
7
|
214
|
September 6, 2025
|
|
Trouble running HUMAnN with updated metaphlan database
|
|
3
|
287
|
December 5, 2025
|
|
Humann3 Database errors
|
|
7
|
199
|
December 8, 2025
|
|
Adding a --metaphlan-options and/or bowtie2db flag to baqlava
|
|
2
|
58
|
December 4, 2025
|
|
Minimap2 Database Files for MetaPhlAn 4.2.2
|
|
7
|
197
|
November 20, 2025
|
|
Maaslin3 filtering out different features to Maaslin2
|
|
3
|
248
|
August 22, 2025
|
|
Dividing an abundance table for multiple Maaslin runs
|
|
8
|
97
|
September 1, 2025
|
|
Missing `mpa_vOct22_CHOCOPhlAnSGB_202403.tsv` in HUMAnN 4 utility_mapping database
|
|
3
|
138
|
February 16, 2026
|
|
Unable to Download utility_mapping Full Database
|
|
4
|
205
|
July 23, 2025
|
|
Connect Pathways to Uniref90 Gene Families IDs to Gene Families
|
|
2
|
242
|
June 20, 2025
|
|
Update HUMAnN for MetaPhlAn 4.2 compatability
|
|
3
|
222
|
June 16, 2025
|
|
Matching tools and database versions
|
|
8
|
160
|
April 9, 2026
|
|
Pairwise comparisons with multi-level categorical variable in MaAsLin3
|
|
5
|
170
|
November 18, 2025
|
|
Maaslin3 transformation and normaliazion fix
|
|
3
|
214
|
November 17, 2025
|
|
I want to assign the variables I want for my heatmap
|
|
7
|
138
|
November 29, 2025
|
|
How to silence database download message from Metaphlan 4.0.6 within Humann 3.8
|
|
4
|
177
|
December 7, 2025
|
|
Understanding RPK values
|
|
3
|
226
|
June 9, 2025
|
|
Using humann4 with metaphlan4.2.2 profiles
|
|
4
|
168
|
July 23, 2025
|
|
Lack of sensitivity of Maaslin3
|
|
6
|
139
|
November 16, 2025
|
|
Humann v3.8 misinterprets non-default analysis types, ie "-t rel_ab_w_read_stats", results from metaphlan 4.1
|
|
4
|
106
|
August 28, 2025
|
|
Maaslin2 "coef" interpretation
|
|
2
|
203
|
July 23, 2025
|
|
StrainPhlan tutorial typo
|
|
0
|
62
|
June 26, 2025
|