|
Barplot in humann2 for gene families
|
|
0
|
411
|
February 7, 2022
|
|
Graphical output of function
|
|
2
|
501
|
July 7, 2023
|
|
Humann_barplot: sample label
|
|
2
|
390
|
September 7, 2023
|
|
Deseq2 analysis of Humann3 outputs
|
|
3
|
864
|
January 3, 2024
|
|
Longs Reads (Nanopore) Humann
|
|
1
|
462
|
January 12, 2024
|
|
Error with bowtie2-build when running humann3
|
|
3
|
324
|
January 12, 2024
|
|
Some questions about Humann3 output
|
|
1
|
153
|
January 12, 2024
|
|
HUMAnN v3 joint taxonomic profile
|
|
10
|
3207
|
January 12, 2024
|
|
Error Message from Diamond in humann v3.8
|
|
3
|
270
|
January 12, 2024
|
|
Unable to find the mpa_pkl
|
|
7
|
3071
|
January 12, 2024
|
|
BioCyc subscription required to access MetaCyc
|
|
1
|
198
|
January 12, 2024
|
|
Humann failed at diamond
|
|
1
|
192
|
January 12, 2024
|
|
Difficulty downloading databases in humann3
|
|
35
|
6610
|
January 10, 2024
|
|
Unable to download HUMAnN databases
|
|
3
|
203
|
December 22, 2023
|
|
MetaCyc - how to install
|
|
1
|
182
|
December 22, 2023
|
|
Humann 3.8 update caused metaphlan error
|
|
3
|
595
|
August 18, 2023
|
|
Diamond (v2.1.8) reported a fatal error when running humann (v3.8)
|
|
2
|
270
|
December 15, 2023
|
|
Metaphlan4 species not included in Humann3.5 output?
|
|
6
|
538
|
December 13, 2023
|
|
Combine HUMAnN gene families file for MaAsLin
|
|
3
|
296
|
December 8, 2023
|
|
Humann output normalized by Metaphlan output
|
|
1
|
300
|
December 8, 2023
|
|
Should I first renorm gene_family to CPM and then regroup to pathway or on the contrary？
|
|
5
|
895
|
December 5, 2023
|
|
What is the best version of the HUMAnN tool?
|
|
1
|
165
|
November 29, 2023
|
|
No metaphlan_profile file was created
|
|
3
|
205
|
November 29, 2023
|
|
HUMAnN filter out non-bacterial pathways and genes
|
|
1
|
217
|
November 29, 2023
|
|
Query on Statistical Analysis Methods in HUMAnN3 Papers [DOI: 10.1038/s41564-018-0306-4]
|
|
2
|
140
|
November 29, 2023
|
|
Inquiry on custom chocophlan database
|
|
2
|
144
|
November 10, 2023
|
|
Humann3 creating many bowtie2 index files in the temp dir
|
|
1
|
290
|
November 10, 2023
|
|
A large number of "Taxon not in mapping file" appeared when analyzing the gut microbes of mice,
|
|
4
|
421
|
November 10, 2023
|
|
High proportion of Unmapped reads in metagenomic data
|
|
6
|
446
|
November 10, 2023
|
|
Installing HUMAnN3 with conda
|
|
6
|
3064
|
November 7, 2023
|