I’ve been using HUMAnN 3.0 and I would like to use MaAsLin2 on the output file from HUManN.
I have completed the HUMAnN regroup, rename, renorm command and have the output as I need it.
Is there a way to combine the outputs? I have 8 samples, and therefore 8 HUMAnN outputs.
I saw this tutorial where they were combined in the “pathways_norm.tsv” file. https://github.com/karkman/MetagenomeCourse2019/blob/master/R_for_Humann2/pathways_norm.tsv
Is this something I would need to write my own script for?
Thank you for your time!