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HUMAnN 3.0 stratified KOs return paradoxical interpretations
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1
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37
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December 4, 2025
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How to parallelize baqlava over many samples?
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2
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11
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December 4, 2025
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Adding a --metaphlan-options and/or bowtie2db flag to baqlava
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2
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27
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December 4, 2025
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MinPath error with baqlava 0.5 metaphlan 3.1.0 and humann 3.9
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2
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17
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December 4, 2025
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Interpretation of interaction terms
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2
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32
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December 4, 2025
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MetaPhlAn 4 + HUMAnN 4 compatibility
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10
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701
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November 30, 2025
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Missing `mpa_vOct22_CHOCOPhlAnSGB_202403.tsv` in HUMAnN 4 utility_mapping database
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0
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22
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November 30, 2025
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I want to assign the variables I want for my heatmap
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7
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19
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November 29, 2025
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Unable to merge virus profile.txt files into table
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3
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212
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November 27, 2025
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Euks in bt2 index but not in .fna?
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0
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18
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November 24, 2025
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Minimap2 Database Files for MetaPhlAn 4.2.2
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7
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96
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November 20, 2025
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Maaslin3 issue error message
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6
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63
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November 19, 2025
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Pairwise comparisons with multi-level categorical variable in MaAsLin3
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5
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73
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November 18, 2025
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How to match HTX samples with the closest MGX sampling in IBDMDB?
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0
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8
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November 17, 2025
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Maaslin3 transformation and normaliazion fix
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3
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58
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November 17, 2025
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Lack of sensitivity of Maaslin3
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6
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37
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November 16, 2025
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Humann biocontainer: Unable to write to the HUMAnN config file
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3
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765
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November 14, 2025
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Single copy gene normalization
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2
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26
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November 13, 2025
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Total RNA contribution for Metatranscriptomics Analysis with MaAsLin3
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5
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44
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November 8, 2025
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RA fixing of vJun23_202307 DB
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0
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42
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November 7, 2025
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KneadData — Need clarification on the exact input file names used at each internal step
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1
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33
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November 7, 2025
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How should I compare HUMAnN 4 “Counts” from concatenated paired-end reads to known species read abundances?
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3
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71
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November 6, 2025
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Metaphlan Results Interpretation
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2
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56
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November 5, 2025
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🌓 PPANINI tool sunset notice: transitioning to MetaWIBELE
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1
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15
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November 4, 2025
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Unable to download the databases in Humann4
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1
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81
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November 4, 2025
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Optimal thread count for KneadData, Bowtie2, MetaPhlAn, and HUMAnN on multi-core systems
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1
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53
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November 4, 2025
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Very low mapping rate of Hummann v4alpha
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1
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57
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November 4, 2025
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Downloading humann from HPC cluster
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1
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37
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November 4, 2025
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Big differences in results depending on type of mapping used?
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5
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148
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November 4, 2025
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Question Regarding the Use of MaAsLin3 for Analyzing Differential Abundance/Prevalence of MetaCyc and GMM Metabolic Pathways
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4
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61
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November 4, 2025
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