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best strategy for analyzing functional changes over time
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1
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47
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June 5, 2026
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Longitudinal analysis using Maaslin3
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9
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114
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June 5, 2026
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HUMAnN4 Support for MetaPhlAn vJan25 Database
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2
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205
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June 4, 2026
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Error running MaAsLin3 for genus level data only
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1
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20
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June 3, 2026
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Announcing WAAFLE 1.5
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2
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123
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June 3, 2026
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Troubles with xtfrm.data.frame
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7
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42
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June 1, 2026
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Custom MetaPhlAn subspecies taxonomy + corresponding HUMAnN ChocoPhlAn pangenome design
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2
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35
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May 28, 2026
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Everything is unclassified
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4
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53
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May 28, 2026
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Metaphlan 4.2.4: TypeError: stat: path should be string, bytes, os.PathLike or integer, not NoneType
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2
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34
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May 27, 2026
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Question regarding normalization method for rarefied 16S ASV data ("TSS" vs "NONE")
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1
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29
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May 27, 2026
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Versions of datasets which are compatible with the latest docker image
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0
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13
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May 26, 2026
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Getting split reads from MetaPhlAn 4.2.4?
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0
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23
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May 26, 2026
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Downloading metaphlan4 SGB genomes
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9
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505
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May 25, 2026
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Difference in sequencing depth
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3
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81
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May 25, 2026
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Total Bacteria species relative abundance no longer sums to 1 after converting the SGB profile to GTDB
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18
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1489
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May 24, 2026
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Biobakery_workflows v4.0.0a1 uses deprecated HUMAnN UniRef build name (uniref90_diamond)
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0
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16
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May 24, 2026
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HUMAnN v4 alpha: clarification on 0.5x coverage threshold and low-abundance taxa filtering
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1
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38
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May 22, 2026
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Strain taxonomic level Identification
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4
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182
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May 22, 2026
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SGB Newick file labels
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3
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87
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May 22, 2026
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MetaPhlAn4 (mpa_vJun23_CHOCOPhlAnSGB_202307): unexpected behavior with fix_relab_mpa4.py
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6
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73
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May 22, 2026
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Beta diversity in metaphlan 4.2.4 doesn't work becuase of rbiom upgrade?
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1
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26
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May 22, 2026
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Correupt bowtie2 index file? metaphlan error
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1
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33
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May 22, 2026
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Adapter detection
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2
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50
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May 18, 2026
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Humann4 conda install from release note
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1
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75
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May 14, 2026
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Nanopore long-reads analysis with Metaphlan4.2.2
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0
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28
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May 12, 2026
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Reliability of MaAsLin3 with small sample sizes
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1
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60
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May 11, 2026
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Reference level changes lead to different pairwise differential abundance results in Maaslin3
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1
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24
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May 11, 2026
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Mismatched reads
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1
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16
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May 11, 2026
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mpa_vJan25_CHOCOPhlAnSGB_202503.fna not downloaded in the .tar file
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2
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107
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May 11, 2026
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Maaslin 3 package versioning
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2
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52
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May 7, 2026
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