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Docker image for HAllA + Tutorial
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0
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5
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October 17, 2026
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Counts/RPK relationship
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1
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19
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October 16, 2026
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TSS normalization for relative abundance input in MaAsLin 3
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3
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41
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October 15, 2026
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Issue with downloading the biobakery databases
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2
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17
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October 14, 2026
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Using HUMAnN3 to predict transporters
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0
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7
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October 14, 2026
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Issue with MaAsLin3 and MTXmodel 0.3 installation
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3
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21
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October 14, 2026
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HUMAnN 4 full release timeline
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0
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30
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October 12, 2026
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Kneaddata contaminant database
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1
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20
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October 8, 2026
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Appropriate method for running MaAsLin3 on metagenome counts normalized to reads per million
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4
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28
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October 6, 2026
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Humann=4.0.0a1 : MinPath12hmp.py:804: SyntaxWarning
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2
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107
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October 5, 2026
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Troubleshooting humann in 2026 CE
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2
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49
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October 5, 2026
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Replotting MaAsLin3 output in specific column order
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4
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46
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October 2, 2026
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Trouble with my variables due to experimental design (absolute abundance environmental microbiome data)
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1
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23
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October 2, 2026
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MetaPhlAn 4 CHOCOPhlAn SGB Mapping to MetaPhlAn3
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0
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15
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October 1, 2026
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External ID. Suffixes _P and _TR
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0
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11
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September 30, 2026
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Downloading databases. Problem with Harvard servers?
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0
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16
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September 28, 2026
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Request for updated SGB-to-GTDB mapping file for MetaPhlAn 4.2.2 Jan 2026 database
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3
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97
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September 25, 2026
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Missing `mpa_vOct22_CHOCOPhlAnSGB_202403.tsv` in HUMAnN 4 utility_mapping database
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4
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240
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September 25, 2026
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MetaPhlAn 4 CHOCOPhlAn SGB Mapping with MetaPhlAn3 texa info
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0
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17
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September 24, 2026
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Read depth and unscaled abundance in MaAsLin3
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4
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44
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September 23, 2026
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Unable to download Databases
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11
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167
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September 22, 2026
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MaAsLin3 analysis for longitudinal clinical analysis
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3
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29
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September 22, 2026
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Maaslin_contrast_test() with median_comparison_abundance uses a z-test instead of t-test for linear mixed models
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4
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32
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September 15, 2026
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Issue because of `collapse` version
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1
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19
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September 15, 2026
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Random versus fixed effects
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1
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48
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September 12, 2026
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Phylophlan Discard a few mags
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1
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20
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September 10, 2026
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Using CONQUR-corrected matrices in MaAsLin 3
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1
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20
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September 5, 2026
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HUMAnN: Depth-normalization with spike-ins
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3
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25
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September 5, 2026
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MaAsLin 3 model for paired samples across independent sampling days
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6
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66
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August 30, 2026
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MetaPhlAn 4 + HUMAnN 4 compatibility
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24
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2702
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August 30, 2026
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