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Super basic query about taxa file for Maaslin3
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0
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2
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December 18, 2025
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Strainphlan sample2markers.py ERROR
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5
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14
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December 18, 2025
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MaAsLin 3: Forcing X-axis variable for Interaction Plots (Diagnosis * Time)
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1
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9
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December 17, 2025
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Is KneadData recommended for mouse fecal shotgun metagenomic samples?
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2
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12
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December 17, 2025
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HUMAnN targeted functional analysis?
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0
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1
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December 17, 2025
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Question about ICTV taxonomy version and naming in BaqLaVa
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1
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2
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December 17, 2025
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SGB Newick file labels
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2
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43
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December 16, 2025
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Error: <ggplot2::labels> object is invalid:
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1
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3
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December 16, 2025
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Association between microbiome feature and next timepoint outcome
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1
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13
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December 15, 2025
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Dereplicating and normalizing reads for humann and metaphlan
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1
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10
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December 15, 2025
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Sgb_to_gtdb_profile.py keep read count estimation from -t rel_ab_w_read_stats
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9
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463
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December 12, 2025
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HUMAnN4 Support for MetaPhlAn vJan25 Database
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0
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18
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December 12, 2025
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Feature request: Include taxonomy columns for baqlava_join_table utility script
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1
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11
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December 11, 2025
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Very-sensitive-local preset and unclassified reads in non-human gut samples
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0
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8
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December 11, 2025
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[Huttenhower Lab Galaxy for LEfSE]
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1
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52
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December 10, 2025
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Fixing broken links in readme.md from HUMAnN GitHub repository
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0
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2
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December 9, 2025
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HUMAnN 4 database downloads inaccessible due to Globus (data.globus.org) domain blocking
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2
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21
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December 9, 2025
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Humann3 Database errors
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7
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23
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December 8, 2025
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HUMAnN (v3.6) a new db update issue - CHOCOPhlAnSGB_202103
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6
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135
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December 7, 2025
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How to silence database download message from Metaphlan 4.0.6 within Humann 3.8
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4
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121
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December 7, 2025
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HUMAnN 4 prescreen issue and input file format clarification
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2
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20
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December 7, 2025
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Combine Output from Separate Runs of Single Sample
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3
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8
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December 5, 2025
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Trouble running HUMAnN with updated metaphlan database
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3
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148
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December 5, 2025
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Humann4 not recognizing relab column in metaphlan4 table
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1
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27
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December 5, 2025
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Zero community-level pathways detected despite gene families present
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1
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25
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December 5, 2025
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Absent tryptophan pathway in all metagenomic results
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1
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17
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December 5, 2025
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Humann=4.0.0a1 : MinPath12hmp.py:804: SyntaxWarning
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1
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41
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December 5, 2025
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Reverse forward reads as input in MetaPhlAn 4
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0
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7
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December 5, 2025
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HUMAnN 3.0 stratified KOs return paradoxical interpretations
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1
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37
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December 4, 2025
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How to parallelize baqlava over many samples?
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2
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11
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December 4, 2025
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