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Database size of humann
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2
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109
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August 1, 2025
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Error running fasta files Metaphlan4.2.3
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3
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87
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October 21, 2025
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Best normalization/transformation strategy in MaAsLin2 for 16S rRNA (Nanopore) data?
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2
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105
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November 4, 2025
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No full uniref90 db in humann4
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2
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105
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March 30, 2026
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Question about the unclassified estiamtion
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1
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120
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July 2, 2025
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Single copy gene normalization
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2
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95
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November 13, 2025
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Possible to make a Github release for MaAsLin3
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5
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84
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August 19, 2025
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Combine Output from Separate Runs of Single Sample
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3
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82
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December 5, 2025
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Reploting MaAsLin summary plot for interactions
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1
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127
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September 2, 2025
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Humann 4 alpha and DIAMOND
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1
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120
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August 1, 2025
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Are humann_regroup_table (utility_mapping) command and flag –utility-database in HUMANnN v4.0.0.alpha.1 doing the same thing?
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2
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94
|
August 28, 2025
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Group comparison per timepoint in a longitudinal study
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5
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68
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March 23, 2026
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Can't load databases
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5
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78
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September 23, 2025
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No abundance for several species
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4
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69
|
September 30, 2025
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Zero filtering of custom Log Ratio data for MaAsLin3
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4
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69
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July 10, 2025
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Statistical Approach for Comparing Functional Potential of Selected SGBs vs. Community Background
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3
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79
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August 28, 2025
|
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MetaPhlAn database download stalls at 16.57%
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2
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89
|
August 21, 2025
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[Huttenhower Lab Galaxy for LEfSE]
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1
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97
|
December 10, 2025
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Questions on handling genefamilies files
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2
|
103
|
July 24, 2025
|
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Best practices for visualizing MetaPhlAn 4 MAG identifiers (SGB, FGB, etc.)?
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1
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98
|
October 27, 2025
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Metaphlan-informed taxonomic stratification and its discrepancies with unirefids
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2
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81
|
August 27, 2025
|
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MetaPhlan doesn't detect any microbial samples
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2
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75
|
October 27, 2025
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Super basic query about taxa file for Maaslin3
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6
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60
|
December 23, 2025
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MetaPhlAn / CHOCOPhlAn version mismatch while doing humann 3 analysis
|
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1
|
94
|
September 23, 2025
|
|
Has the human3 database been updated?
|
|
1
|
90
|
August 1, 2025
|
|
Analysis of longitudinal data
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3
|
70
|
February 27, 2026
|
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SGB Newick file labels
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2
|
79
|
December 16, 2025
|
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Only ~3% of UniRef90 gene families are regrouped to KO in HUMAnN3 — advice appreciated
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|
1
|
102
|
July 23, 2025
|
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HUMAnN 4 prescreen issue and input file format clarification
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2
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73
|
December 7, 2025
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How to get count data (not RPK)?
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1
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102
|
August 27, 2025
|
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Random effect participant ID - categorical
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2
|
72
|
July 16, 2025
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Optimal thread count for KneadData, Bowtie2, MetaPhlAn, and HUMAnN on multi-core systems
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1
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88
|
November 4, 2025
|
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Testing 4 levels against a control but the results show only two levels
|
|
2
|
70
|
October 24, 2025
|
|
Question on Paired Design Implementation in MaAsLin3
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2
|
72
|
October 16, 2025
|
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MetaPhlAn Input for paired end sequences previously filtered?
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2
|
67
|
October 20, 2025
|
|
Coverage Data from MetaPhlAn 4.1
|
|
1
|
80
|
August 5, 2025
|
|
Error message in Maaslin3
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|
2
|
67
|
October 19, 2025
|
|
Announcing WAAFLE 1.5
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|
2
|
80
|
April 28, 2026
|
|
[Errno 21] Is a directory" during .nwk download & "database partially present" warning
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|
1
|
74
|
September 11, 2025
|
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HUMAnN MinPath drastically reducing pathway counts and inconsistent results
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|
1
|
77
|
August 27, 2025
|
|
HUMAnN 4 database downloads inaccessible due to Globus (data.globus.org) domain blocking
|
|
2
|
70
|
December 9, 2025
|
|
Maaslin3 not finding significant features despite clustering in ordination
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2
|
59
|
September 2, 2025
|
|
ANPAN outcome only accept binominal or numeric variables
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|
2
|
70
|
August 28, 2025
|
|
MinPath error with baqlava 0.5 metaphlan 3.1.0 and humann 3.9
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|
2
|
65
|
December 4, 2025
|
|
HUMAnN - Pathway contribution data
|
|
1
|
87
|
August 27, 2025
|
|
95% confidence interval of coef - MaAsLin2
|
|
3
|
35
|
February 21, 2026
|
|
Analyzing Weekly Changes in Bacterial Profiles Following Repeated Administration of Formulations (MaAsLin 3)
|
|
2
|
41
|
February 17, 2026
|
|
Metaphlan no taxa
|
|
2
|
67
|
June 16, 2025
|
|
MaAslin2 Question about gFC calculation and interpretation
|
|
1
|
74
|
June 16, 2025
|
|
Kneaddata tar of human_genome uncompresses in subdirectory
|
|
2
|
60
|
June 25, 2025
|