I have not been able to install metaphlan using the docker image. I had no trouble installing humann with the docker image. Is there any reason that the metaphlan image would not work in the same way? I am using singularity to make a module to install on a CHPC.
Hi, which Docker image are you referring to? Can you provide a log with the errors you are experiencing?
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Yes, I have tried
docker://biobakery/metaphlan:3.0.1
docker://biobakery/metaphlan:latest
docker://biobakery/metaphlan
They all failed with similar log files. I have the docker://biobakery/metaphlan:3.0.1 log file attached.containerBuild8726398.outerror.txt (6.6 KB)
It seems that this issue is related to Singularity. Can you provide the command line you used to convert the Docker image to a SIF?
Even I am facing the problem with docker pull. I am getting the error as following. Couldn’t figure out where it is going wrong? Please help.
It looks like you don’t have permissions to write in /usr.
@lauren.j.mciver , should Docker be able to write in there?
/usr has all read, write and execute permissions.
