Dear asnicar
There is smoe genes that I can’t download, is the uniref website change gene name?
phylophlan_setup_database \
-g s__Bacteroides_vulgatus \
-o ./s_vulgatus/ \
--verbose 2>&1 | tee log/phylophlan_setup_database.log
[e] unable to download "http://www.uniprot.org/uniref/UniRef90_A0A396ANJ6.fasta"
Downloading "http://www.uniprot.org/uniref/UniRef90_A0A0N7J7J7.fasta" to "./s_vulgatus/s__Bacteroides_vulgatus/A0A0N7J7J7.faa"
[e] unable to download "http://www.uniprot.org/uniref/UniRef90_A0A0N7J7J7.fasta"
Downloading "http://www.uniprot.org/uniref/UniRef90_R7KG75.fasta" to "./s_vulgatus/s__Bacteroides_vulgatus/R7KG75.faa"
[e] unable to download "http://www.uniprot.org/uniref/UniRef90_R7KG75.fasta"
Downloading "http://www.uniprot.org/uniref/UniRef90_A0A0K2HE35.fasta" to "./s_vulgatus/s__Bacteroides_vulgatus/A0A0K2HE35.faa"
[e] unable to download "http://www.uniprot.org/uniref/UniRef90_A0A0K2HE35.fasta"
Downloading "http://www.uniprot.org/uniref/UniRef90_A0A076IMH5.fasta" to "./s_vulgatus/s__Bacteroides_vulgatus/A0A076IMH5.faa"
Is there some database update than “taxa2core_cpa201901_up201901.txt.bz2” ?