|
Biobakery_workflows using SGE hangs after kneaddata completes, gives error for each task
|
|
1
|
342
|
August 30, 2024
|
|
Kneaddata tossing roughly half of the reads at the trimmomatic step
|
|
0
|
38
|
August 29, 2024
|
|
Kneaddata unable to interpret sequencing header format
|
|
4
|
117
|
August 23, 2024
|
|
Paired End Run output explanation
|
|
1
|
93
|
August 22, 2024
|
|
Installation graphlan
|
|
4
|
124
|
August 17, 2024
|
|
Metaphlan sequence identification
|
|
0
|
18
|
August 13, 2024
|
|
Bowtie2 removed the entire reads from my fecal metagenomic data
|
|
2
|
132
|
August 10, 2024
|
|
Biobakery_workflows wmgx ValueError: could not convert string to float: '8.355B'
|
|
0
|
93
|
May 22, 2024
|
|
Trimmomatic errors
|
|
2
|
130
|
August 2, 2024
|
|
MTX Model IBD Data Processing Pipeline
|
|
1
|
59
|
July 26, 2024
|
|
Failed building wheel for biopython
|
|
2
|
595
|
July 5, 2024
|
|
Processes and threads command difference in Kneaddata
|
|
0
|
80
|
July 1, 2024
|
|
Paired input to kneaddata resulting in unpaired files
|
|
1
|
412
|
June 29, 2024
|
|
Taxonomic-profiling-options with more than one option
|
|
0
|
52
|
June 27, 2024
|
|
Can't change annotation colors on graphlan cladogram
|
|
0
|
73
|
June 21, 2024
|
|
Paired-end data results in unpaired output
|
|
27
|
6199
|
June 20, 2024
|
|
MTX Model Coefficient to Log Fold Change
|
|
0
|
92
|
June 10, 2024
|
|
Metatranscriptomic pre-processing
|
|
3
|
365
|
June 13, 2024
|
|
Biobakery workflows computational speed
|
|
8
|
906
|
June 12, 2024
|
|
Combined MTX/MGX analysis, contamination removal
|
|
0
|
77
|
May 28, 2024
|
|
Limit input file size when running kneaddata
|
|
0
|
80
|
May 20, 2024
|
|
Bug for TRF Download
|
|
1
|
192
|
May 8, 2024
|
|
KneadData critical error in bowtie2_discordant_pairs
|
|
12
|
1957
|
April 17, 2024
|
|
Kneaddata stringent bowtie2 filtering
|
|
0
|
151
|
April 3, 2024
|
|
Biobakery workflows absolute reads
|
|
0
|
100
|
April 9, 2024
|
|
`pip install kneaddata` doesn't install dependencies
|
|
2
|
617
|
April 2, 2024
|
|
Error with bowtie2: Saw ASCII character 10 but expected 33-based Phred qual
|
|
0
|
189
|
March 29, 2024
|
|
BIOBAKERY_WORKFLOWS_DATABASES: command not found
|
|
0
|
130
|
March 12, 2024
|
|
Biobakey tools version for data reproducibility
|
|
0
|
160
|
February 22, 2024
|
|
Accessing the MGX-normalized MTX feature expression data in MTX_model?
|
|
1
|
184
|
March 5, 2024
|