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Biobakery_workflows using SGE hangs after kneaddata completes, gives error for each task
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1
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332
|
August 30, 2024
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Kneaddata tossing roughly half of the reads at the trimmomatic step
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0
|
33
|
August 29, 2024
|
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Kneaddata unable to interpret sequencing header format
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4
|
98
|
August 23, 2024
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Paired End Run output explanation
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1
|
73
|
August 22, 2024
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Installation graphlan
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4
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106
|
August 17, 2024
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Metaphlan sequence identification
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0
|
13
|
August 13, 2024
|
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Bowtie2 removed the entire reads from my fecal metagenomic data
|
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2
|
112
|
August 10, 2024
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Biobakery_workflows wmgx ValueError: could not convert string to float: '8.355B'
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0
|
85
|
May 22, 2024
|
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Trimmomatic errors
|
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2
|
111
|
August 2, 2024
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MTX Model IBD Data Processing Pipeline
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1
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50
|
July 26, 2024
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Failed building wheel for biopython
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2
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567
|
July 5, 2024
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Processes and threads command difference in Kneaddata
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0
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69
|
July 1, 2024
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Paired input to kneaddata resulting in unpaired files
|
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1
|
400
|
June 29, 2024
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Taxonomic-profiling-options with more than one option
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0
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48
|
June 27, 2024
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Can't change annotation colors on graphlan cladogram
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0
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68
|
June 21, 2024
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Paired-end data results in unpaired output
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27
|
6089
|
June 20, 2024
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MTX Model Coefficient to Log Fold Change
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0
|
85
|
June 10, 2024
|
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Metatranscriptomic pre-processing
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3
|
353
|
June 13, 2024
|
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Biobakery workflows computational speed
|
|
8
|
884
|
June 12, 2024
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Combined MTX/MGX analysis, contamination removal
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0
|
74
|
May 28, 2024
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Limit input file size when running kneaddata
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0
|
72
|
May 20, 2024
|
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Bug for TRF Download
|
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1
|
175
|
May 8, 2024
|
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KneadData critical error in bowtie2_discordant_pairs
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12
|
1910
|
April 17, 2024
|
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Kneaddata stringent bowtie2 filtering
|
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0
|
149
|
April 3, 2024
|
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Biobakery workflows absolute reads
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0
|
92
|
April 9, 2024
|
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`pip install kneaddata` doesn't install dependencies
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2
|
602
|
April 2, 2024
|
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Error with bowtie2: Saw ASCII character 10 but expected 33-based Phred qual
|
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0
|
179
|
March 29, 2024
|
|
BIOBAKERY_WORKFLOWS_DATABASES: command not found
|
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0
|
119
|
March 12, 2024
|
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Biobakey tools version for data reproducibility
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0
|
156
|
February 22, 2024
|
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Accessing the MGX-normalized MTX feature expression data in MTX_model?
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1
|
175
|
March 5, 2024
|