The bioBakery help forum

Difficulty downloading databases in humann3

The links are great!
Could we request for mirror links for Kneaddata database as well?
Link is currently down.

Download URL:
CRITICAL ERROR: Unable to download and extract from URL:

I’m sorry, but unfortunately I do not have a local copy of that database.

Hi @szehan,

Apologies for the inconvenience. We had a server outage over the weekend due to which Kneaddata databases downloads was failing.

The above link works now.


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I installed Humann3 and used the database full_chocophlan.v296_201901.tar.gz and got this error
CRITICAL ERROR: The directory provided for ChocoPhlAn contains files ( full_chocophlan.v296_201901.tar.gz ) that are not of the expected version. Please install the latest version of the database: 201901b
the 201901b differs from 201901 version in header information I guess.

@fbeghini could you share the 201901b database in Dropbox?

Yes, @hshcao You can find it here

Thank you very much.

Hi Would you be able to share the latest uniref90 version 201901b? I have been trying to download from humann website for last three days with no luck. Thanks

Hello @siraje , I am re-posting the link shared by @fbeghini : Index of /databases/HUMAnN

Thank you!

Thanks a lot Lauren for the link. I already tried with this link. However, the download fails after few hours. Therefore I was asking @fbeghini the alternative dropbox link for the latest uniref90 version 201901b. Can you please share that?

Thank you