HUMAnN

Topic	Replies	Views	Activity
Announcing HUMAnN 3.7 Summary: HUMAnN 3.7 enables tiered search using MetaPhlAn 4’s recently updated marker database (October 2022 version) and the bioBakery 3.1 pangenome catalog. What has changed in HUMAnN 3.7: HUMAnN 3.7 maps MetaPhl…	3	1906	May 4, 2023
Getting error "Zero gene tables were found to join." with humann_join_table	0	7	May 13, 2024
Humann v3.9 sam file input error	1	24	May 10, 2024
HUMAnN database download	8	383	May 10, 2024
Humann3 only generated temp folder and no 3 main output files	3	312	May 7, 2024
Help with understanding identifier mappings for HUMAnN?	2	69	May 3, 2024
Humann with the latest version of metaphlan4	5	172	May 2, 2024
Humann 3.9 Demo file results	0	28	May 2, 2024
CRITICAL: Can not find file sample_616_metaphlan_bugs_list.tsv	2	81	April 30, 2024
HUMAnN for Low Biomass Scenario	0	36	April 30, 2024
Only e.coli detected	5	738	April 30, 2024
Humann nucleotide alignment	0	34	April 29, 2024
Metaphlan V4.0.2 and Huma 3.6: MetaPhlAn taxonomic profile provided was not generated with the expected database	33	3716	April 29, 2024
No species found from stool.fasta file in HUMAnN tutorial	1	41	April 26, 2024
Cannot run humann v3.7 using the latest Chocophlan database	15	679	April 26, 2024
HumanN 4 release date	12	1758	April 24, 2024
CRITICAL ERROR: The directory provided for ChocoPhlAn contains files ( alaS.centroids.v201901_v31.ffn.gz ) that are not of the expected version	2	106	April 23, 2024
Bowtie2 Could not open bowtie2_aligned.sam	2	59	April 17, 2024
HUMAnN3 analysis not proceeding with RNAseq data	2	109	April 15, 2024
CRITICAL ERROR: The metaphlan executable can not be found. Please check the install	1	53	April 11, 2024
Way to identify virus in humann3 with metaphlan?	1	77	April 11, 2024
Metatranscriptomics of enriched cultures from a stool	1	64	April 11, 2024
Does Genefamilies, Pathabundance and pathcoverage work with split reads?	1	51	April 11, 2024
Most results from humann3 unclassified	1	71	April 11, 2024
EC numbers and bacteria	1	69	April 11, 2024
Humann databases need to be updated	0	71	April 8, 2024
CRITICAL ERROR: The directory provided for ChocoPhlAn contains files that are not of the expected version	5	942	August 18, 2023
Inconsistent pathway stratification	4	188	March 11, 2024
Not able to upgrade HumanN to version 3.9	6	146	March 7, 2024
The genefamily file has results, but there are no functional enrichment results in the pathcoverage.tsv and pathabundance.tsv files	3	132	March 7, 2024

Announcing HUMAnN 3.7

Summary: HUMAnN 3.7 enables tiered search using MetaPhlAn 4’s recently updated marker database (October 2022 version) and the bioBakery 3.1 pangenome catalog. What has changed in HUMAnN 3.7: HUMAnN 3.7 maps MetaPhl…