I am trying to run the biobakery workflow but run into this issue. I also tried installing metaphlan separately but ran into a libdev guide error situation… Any ideas?
(base) (squirrel) [arh0899@qhimem0014 ~]$ biobakery_workflows wmgx --input ~/Saimiri_shotgun --output ~/squirrel/biobakery_workflow
Traceback (most recent call last):
File “/home/arh0899/squirrel/bin/wmgx.py”, line 132, in
merged_taxonomic_profile, taxonomy_tsv_files, taxonomy_sam_files = shotgun.taxonomic_profile(workflow,
File “/home/arh0899/squirrel/lib/python3.9/site-packages/biobakery_workflows/tasks/shotgun.py”, line 350, in taxonomic_profile
depends=[depend_fastq,TrackedExecutable(“metaphlan”)],
File “/home/arh0899/squirrel/lib/python3.9/site-packages/anadama2/tracked.py”, line 199, in new
real_key = cls.key(key)
File “/home/arh0899/squirrel/lib/python3.9/site-packages/anadama2/tracked.py”, line 689, in key
raise ValueError(
ValueError: Unable to find binary or script `metaphlan’