Is it possible to use the
humann-downloaded chocophlan for metaphlan? I know it’s possible to go the other way, but I already have it downloaded (and it took like an hour), so would rather not repeat that step. I tried adding
--bowtie2db /path/to/humann/chocophlan --index mpa_v30_CHOCOPhlAn_201901
to metaphlan, but this had an issue with the md5 checksum:
Downloading MetaPhlAn database Please note due to the size this might take a few minutes File /babbage/biobakery_databases/humann/chocophlan/mpa_v30_CHOCOPhlAn_201901.tar already present! Downloading https://www.dropbox.com/sh/7qze7m7g9fe2xjg/AACTzoUYDqZps8u2JqWCNCODa/mpa_v30_CHOCOPhlAn_201901.md5?dl=1 Downloading file of size: 0.00 MB MD5 checksums do not correspond! If this happens again, you should remove the database files and rerun MetaPhlAn so they are re-downloaded
Similar to this post, but that discussion went in a bunch of different places, so I thought a new post was warranted.
❯ metaphlan --version MetaPhlAn version 3.0.2 (23 Jul 2020) ❯ humann --version humann v3.0.0.alpha.3