How do I get the v30 database?

Microbial community profiling HUMAnN
1

#installed via conda
$ metaphlan -v
MetaPhlAn version 3.0.1 (25 Jun 2020)

$ humann --version
humann v3.0.0.alpha.3

I run the updater, but it downloads the wrong version by default:
$ humann_databases --download chocophlan full ./db --update-config yes
Download URL: http://huttenhower.sph.harvard.edu/humann2_data/chocophlan/full_chocophlan.v296_201901.tar.gz

Downloading file of size: 15.30 GB

I’d download it manually if I knew the path to the databases…

Thanks,
-bigdoyle

2

Hello bigdoyle, Thank you for the detailed post and sorry for any confusion. You are downloading the latest version of the ChocoPhlAn (nucleotide) database for HUMAnN.

Thank you,
Lauren