Hello to all,
I wanted to ask if anyone of you knows why when I generate the plot with Lefse I get a repeated genus with the same value. I have checked the input document, and I have been able to corroborate that it only appears once. Is there any way to modify it?
I also wanted to ask another question. We have two groups; Probiotic and placebo. With lefse we’re trying to see the changes. In our .txt file it only appears taxa in the row up to “Corynebacterium”. When we plot it in Lefse we observe that LDA scores are different between order, family and genus but it’s strange since the value for each observation is the same in the .txt file. Could you please explain me why and how to solve it?
Thanks to all.