The bioBakery help forum

Phylophlan_metagenomic crashed

Microbial community profiling PhyloPhlAn
#1

Hi,

We tried to run phylophlan_metagenomic on the tutorial data (PhyloPhlAn 3.0: Example 03: Metagenomic application · biobakery/biobakery Wiki · GitHub)

But we always get the following error:

[e] [Errno 121] Remote I/O error

[e] error while disting
    ['output_metagenomic_sketches/output_metagenomic_paste_1.msh']
    phylophlan_databases/SGB.Jan19/1669.msh
    output_metagenomic_dists/1669.tsv
    True

[e] [Errno 121] Remote I/O error

[e] disting crashed

Thanks in advance
Sabry

#2

Hi @Sabry,

thanks for reporting this, however, I believe the error you’re getting it is probably not due to phylophlan_metagenomic but it is probably more related to the machine.

I just re-run the example without any problems on my server.

Many thanks,
Francesco