Hi,
I have pathways data from humann3, and based on figures shown in the Biobakery_workflows tutorial I should be able to generate a heatmap that charts pathways in a heatmap (ie Top 25 pathways by average abundance). Unfortunately, we have had trouble getting workflows working on our school’s computing cluster. Is there a way to generate these without using workflows? I have looked through many tutorials at this point, and haven’t found anything. I tried just calling the pathways abundance file instead of the taxonomy table, but that did not work (unsupported dtype object). Thanks for any help that anyone can provide!