The bioBakery help forum

Visualisation workflow heatmap x-axis error

Hi, I am trying to run the biobakery workflows tutorial using the biobakery/workflows Docker image. I used the sample output files to run the visualisation workflow but the x-axis of the heatmaps in the final report are all numbers instead of the sample names. I don’t know what’s the issue since all the other graphs are fine.
Any help would be greatly appreciated. Thank you!




Hello, Thank you for the detailed post and sorry for the slow reply. The heatmaps are generated with hclust2. Can you double check your hclust2 version and if needed upgrade to the latest version?

Thank you,
Lauren

Hello Lauren,

Thanks for your reply. The hclust2 version I am using is 1.0.0.

Thank you for the reply. Can you try upgrading your version of the workflows? I think this should resolve the issue with the heatmaps when using the latest hclust2.

Thank you,
Lauren

Hello Lauren,

Thank you for your reply. I have been using the latest version of workflows as well. The problem still persists.