I am trying to run Humann3, I downloaded the databases:
humann_databases --download chocophlan full /cluster/projects/nn8021k/humann_database
humann_databases --download uniref uniref90_diamond /cluster/projects/nn8021k/humann_database
Upon running the human, I got that error (No MetaPhlAn BowTie2 database found (–index option)!)
I googled the issue but no solution.
Could you please help me with that?