(No MetaPhlAn BowTie2 database found (--index option)!)

Microbial community profiling HUMAnN
1

Hi,

I am trying to run Humann3, I downloaded the databases:

humann_databases --download chocophlan full /cluster/projects/nn8021k/humann_database
humann_databases --download uniref uniref90_diamond /cluster/projects/nn8021k/humann_database

Upon running the human, I got that error (No MetaPhlAn BowTie2 database found (–index option)!)

I googled the issue but no solution.

Could you please help me with that?

2

Hi @ahmedbar
Would you share the complete humann command that causes that error? That may help others help you out