I am using humann v3.9
I recently downloaded this and updated all reference databases
I am running the following command after running kneaddata to remove human sequences
code:humann --input sample.r1_kneaddata.fastq --output ./humann3 --threads 24
error: flatpak: symbol lookup error: /lib64/libk5crypto.so.3: undefined symbol: EVP_KDF_ctrl, version OPENSSL_1_1_1b
/users/.conda/envs/humann3/lib/python3.12/site-packages/humann/quantify/MinPath12hmp.py:804: SyntaxWarning: invalid escape sequence ‘\d’
Followed by repeating errors: users/.conda/envs/humann3/lib/python3.12/site-packages/humann/quantify/MinPath12hmp.py:804: SyntaxWarning: invalid escape sequence ‘\d’
and finally: m = re.match(‘[1]+(?P\d+)’, aline)
Which repeats many many times prior to running metaphlan, bowtie2, diamond and then creating the genefamilies.tsv, pathabundance.tsv, and pathcoverage.tsv
Should I be worried? I’ve run humann several times in the past with older versions without this error.
Thank you for your help!
^\d ↩︎