Hello,
I used the humann2 tool previously for my clinical-based data analyses. However, when I wanted to use it again a few months later, it did not work anymore. Consequently, I re-installed humann2 and the required databases but I still get the following error message, when I try to run humann2:
Decompressing gzipped file …
Running metaphlan2.py …
Traceback (most recent call last):
File “/miniconda3/bin/humann2”, line 11, in
sys.exit(main())
File “/miniconda3/lib/python2.7/site-packages/humann2/humann2.py”, line 906, in main
custom_database = prescreen.create_custom_database(config.nucleotide_database, bug_file)
File “/miniconda3/lib/python2.7/site-packages/humann2/search/prescreen.py”, line 93, in create_custom_database
read_percent=float(line.split("\t")[1])
ValueError: invalid literal for float(): 2|1239|91061|186826|1300|1301|2803
Do you have a bit of advice on what I can do about it?
Thank you very, very much in advance!
Kind regards,
Marie