I’m trying to run samples with metaphlan3 that ran just fine with metaphlan2. I ran the command
% metaphlan --input_type fastq /opt/water/concatenated/19040D-02-01_S43_L004.fastq
and metaphlan just hangs as if it’s waiting for input from the keyboard. Why does it do this? I’m running
% metaphlan --version
MetaPhlAn version 3.0 (20 Mar 2020)
Thanks.
Daniel