Hi I use humann3 but find only 38 species in metaphaln_bugs_list, but the results from kraken and motus have 6199 and 91 each, humann2 have 52 ?
why humann3 less than huamnn2?
# humann3
$ grep "s__" 10WK-D54_humann_temp/10WK-D54_metaphlan_bugs_list.tsv |wc -l
38
# kraken2
[$ grep "s__" 10WK-D54.report |awk -F" " '$2 !=0 {print $2}'|wc -l
6199
# motus2
grep -v "#" 10WK-D54_taxonomy.txt |awk -F " " '$2!=0 {print $2}'|wc -l
91
# humann2
cat 10WK-D54_metaphlan_bugs_list.tsv |grep "s__"|wc -l
52