I am using humann2 for a final project which will end mid-june. I’m sending this mail regarding the humann2 incompatibility with metaphlan2.
Humann2 gets stuck in a loop at when downloading the .mpa file from methaphlan2.
Is this a problem with metaphlan2 or is it a problem with the conda installation?
I’ve also used a docker container for humann3 alpha at: https://hub.docker.com/r/biobakery/humann.
This seemed to work for metaphlan3 but not for diamond (incompatibility issues). This is due to
diamond changing their format. Updating the database results in humann saying there is an incompatible diamond database version. Finally, is there a date when humann3 will be released on conda?