Hi community ( @franzosa ) !!!
I have two groups of samples: case and control. I have output from MetaPhlAn3 and HUMAnN3. I want to find out the differentially abundant taxa in the control and case samples from the MetaPhlAn3 output and similarly, the differentially abundant pathways and gene families in the case and control groups from the HUMAnN3 output. Can I use MaAsLin2 for both purposes? If yes, can you please guide me?
Thanks for your time,