Hello! I am trying to use fugossem to characterize some hypothetical proteins. Can the input MTX file include samples as columns and gene names as rows from a transcriptomic analysis or does it have to be from a proteomics experiment? Then does the GO tsv have to be the associated GO for some of the known genes (does not need all)? Something like below (imagine it’s a matrix though)
GeneSymbol Sample 1 Sample 2 Sample 3 Sample 4 Sample 5 Sample 6 Sample 7 Sample 8 Sample 9
AW25_RS00005 657.015162978176 727.518425755497 762.100473024637 647.636291632532 709.104354077248 647.471934451004 402.94912816652 401.721369224263 498.328664648842
AW25_RS00010 2580.74234603125