Gene Ontology (GO) file as an alternative to UniRef90 for Melonnpan training

Microbial community profiling MelonnPan
1

Hello!! Can we use gene family files regrouped to Gene Ontology(GO) as an input during Melonnpan training workflow as an alternative to Uniref90? (since Uniref90 gene family files are much larger in size and hence may take more time during melonnpan train workflow)

GO ABUNDANCE.txt (1.6 KB)
I have attached a sample gene family abundance file (regrouped to Gene Ontology)
Thanks

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Absolutely. The MelonnPan training module is both platform- and data-type-agnostic. Likewise, a MelonnPan model can be trained as long as both the metabolomics and metagenomics input data are paired.

Thanks a bunch,
Himel

3

thank you so much!! @himel.mallick