Input uniref90 IDs from humann3 not recognized by melonnpan

Microbial community profiling MelonnPan
1

I used humann3 to get the uniref90 gene IDs and feed melonnpan with them. As melonnpan works with humann2, will you update melonnpan to use uniref90 IDs from humann3?
thanks,
Huansheng

2

Hi @hshcao - we are not planning to update the default model as it would require re-training the model with HUMAnN3-profiled metagenomes. However, you can always train your own model and use the resulting weights for prediction which is arguably the best approach going forward.

3

Hi,

I’m wondering, is Melonnpan compatible with Humann3 now?

Thanks,

Xuan

4

Hi Xuan - at the moment the answer is no for MelonnPan but you may want to check out MIMOSA2 which has support for HUMAnN 3 if I am not incorrect. Thanks a bunch!

5

Wonderful! Thank you!