From: Damini <damini@thuenen.de>
I am a PhD student in Germany. In order to analyse my data, I have been trying to use LefSe by accessing the Huttenhower Galaxy Server:http://huttenhower.sph.harvard.edu/galaxy/
I’m providing the tab limited file following the format of demo file (hmp_small_aerobiosis.txt). But, I’m getting the following error
Traceback (most recent call last):
File “/shed_tools/testtoolshed.g2.bx.psu.edu/repos/george-weingart/lefse/a6284ef17bf3/lefse/format_input.py”, line 429, in
class_sl,subclass_sl,class_hierarchy = get_class_slices(zip(*cls.values()))
File “/shed_tools/testtoolshed.g2.bx.psu.edu/repos/george-weingart/lefse/a6284ef17bf3/lefse/format_input.py”, line 145, in get_class_slices
previous_class = data[0][0]
IndexError: list index out of range
Could you please suggest, what might be the problem? Or what should I do?
Thanks for your help and time.
Best regards,
Damini
Damini
Thünen-Institut für Biodiversität
Bundesallee 65
38116 Braunschweig
Tel. 0531 596 2551
Fax 0531 596 2599
email: damini@thuenen.de
web: http://www.thuenen.de/de/bd
Das Johann Heinrich von Thünen-Institut, Bundesforschungsinstitut für Ländliche Räume, Wald und Fischerei – kurz: Thünen-Institut – besteht aus 14 Fachinstituten, die in den Bereichen Ökonomie, Ökologie und Technologie forschen und die Politik beraten.
Damini
Thünen Institute of Biodiversity
Bundesallee 65
38116 Braunschweig (Germany)
Tel: +49 531 596-2551
Fax: +49 531 596-2599
Mail: damini@thuenen.de
Web: http://www.thuenen.de/en/bd/
The Johann Heinrich von Thünen Institute, Federal Research Institute for Rural Areas, Forestry and Fisheries - Thünen Institute in brief - consists of 14 specialized institutes that carry out research and provide policy advice in the fields of economy, ecology and technology.