I would like clarification as to what data is used to plot the LEfSe results on the galaxy pipeline. As I understand, the LDA result should output a tabulated file with the log of the highest mean among all classes, followed by the class with the highest mean and then the logarithmic LDA score.
But there are 4 columns of data in the tabulated output and I am not sure which column is used to plot the LEfSe results on the galaxy module.
My analysis aims to identify taxa which are discriminative for soil amendments(class). I’ve attached a portion of the LEfSe results I have for your reference and appreciate a clarification.
LEfSe_help.csv (979 Bytes)