Compatibility of metaphlan4.0.3 output with human3.9

[franzosa]

I just answered a similar post earlier today, please see this:

Trouble running HUMAnN with updated metaphlan database

The different HUMAnN 3.x releases are each compatible with a separate MetaPhlAn 4 database (please see their release notes for details). However, we have not released a HUMAnN 3.x yet for the latest (Jan25) MetaPhlAn 4 database, and I’m not sure if we will given that we are shifting focus to HUMAnN 4 at this point. You and others here are welcome to reply and let us know if maintaining backward compatibility is important for your workflows. If there’s a lot of interest that would provide more m…

You can find information about the “unexpected files” question in previous posts, although it sounds like that has been solved.