Hi community. @fbeghini @franzosa @f.asnicar @NSegata
I have profile metagenome with Metaphlan3. I am using krona in galaxy for visualisation using the profile output file as the input for Krona. Although I am getting a html file there (around 250kb), when I open them, it opens as an empty tab. I am not getting the expected pie chart.
This is my profile file
biobakery.txt (148.5 KB)
I have also installed krona2.7 in my system and used the following codes:
$python3 metaphlan2krona.py --profile baseline_profile.txt --krona baseline_profile.krona.txt $ktImportText baseline_profile.krona.txt -o baseline_profile.krona.txt.html
The result is a .html file with a pie chart. BUT, the abundance labelled in the chart is not same as of the abundance profile .txt file.
Can you please help me? I am stucked at this point.
Thanks and regards,