The bioBakery help forum

uniprotID mapping to Gene Ontology

The annotation of some Gene Ontology id( such as GO:0001130 not in map_go_name.txt.gzmap_go_name.txt (2.7 MB), but can be found in map_go_uniref90.txt.gz.

I don’t know how to deal with it.


Probably just an issue of GO being slightly out of sync with UniProt. UniProt only associates sequences with functional annotation IDs, so we have to find the names associated with those IDs in other places (here, the GO website), and this can sometimes cause them to mismatch slightly.