The bioBakery help forum

Request for information -- Dynamics of metatranscription in the inflammatory bowel disease gut microbiome

From: Phil Strandwitz <strandwitz.p@gmail.com>
Dear Dr. Huttenhower,

I read through your excellent paper titled " Dynamics of metatranscription in the inflammatory bowel disease gut microbiome ", published in Nature, 2018, with great interest.

In particular, I was hoping you would be able to share the output of your HUMAnN2 run from this study?

In a perfect world, this would be something similar to what you provided in Data Set 2 of your earlier study titled " Metatranscriptome of human faecal microbial communities in a cohort of adult men ". This was a tsv of the functional pathway predictions for the taxa within the metagenomes.

Thanks much for your time,

Best,

Phil

Hi Phil,

Thanks for reaching out to us. To find the output of HUMAnN2 of the above study, please direct to https://ibdmdb.org/results and Products column of HMP2_Pilot studies.

Regards,
Sagun