PR for an LSF Runner?

Infrastructure and utilities AnADAMA2
#1

Hello,
I needed to run a few samples through the metagenomic biobakery workflow, and was sad to see that LSF was not supported (although perhaps it was at some point?). I have hacked together a solution where I’ve created a new runner class based heavily on the SGE profile, which seems to be working well enough for my purposes.

Would you be interested in a PR? I’d definitely appreciate the teams input to make sure the changes I’m proposing are on the right track.

Thanks!

#2

Alternatively, if Anadama is being depreciated in favor of tools that already support multiple backends (snakemake, nextflow, wdl, etc), i would be happy to help with the transition.