Hi there,
Thanks for using PPANINI!
The version you installed via conda seems still under-developing. We are working on further improvements.
Right now, PPANINI v0.7.3.1 is relatively stable. Could you please try to use this version instead (https://bitbucket.org/biobakery/ppanini/wiki/Home)? Use ‘pip install ppanini’ to install it. This version should have the same options described in PPANINI tutorial. You can use ‘ppanini_test’ to see if it’s installed correctly. Please let us know if it still doesn’t work for your data.
Thanks!
Yancong