Hello, Thank you for the detailed post! It looks like the error is during the MinPath call which in turn calls glpsol (part of glpk). If you would try updating your version of glpk it might resolve the issue as I have seen errors with older versions of this tool. You can install HUMAnN with pip adding the option --no-binary :all: and it will install all of the dependencies it needs (including a newer version of glpk).
Thank you,
Lauren