When I install humann3 (using Pip and/or conda) I do not get any error messages, but when I run humann_test I get the following error:
ERROR: test_pathways_abundance_with_names (advanced_tests_quantify_modules.TestHumannQuantifyModulesFunctions)
Test the pathways abundance computation (xipe and minpath are off)
MemoryError
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File “/home/nagrayson/miniconda3/envs/humann3/lib/python3.10/site-packages/humann/tests/advanced_tests_quantify_modules.py”, line 634, in test_pathways_abundance_with_names
reactions_database=store.ReactionsDatabase(config.pathways_database_part1)
MemoryError
======================================================================
ERROR: test_pathways_coverage_with_names (advanced_tests_quantify_modules.TestHumannQuantifyModulesFunctions)
Test the pathways coverage computation (xipe and minpath are off)
MemoryError
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File “/home/nagrayson/miniconda3/envs/humann3/lib/python3.10/site-packages/humann/tests/advanced_tests_quantify_modules.py”, line 580, in test_pathways_coverage_with_names
reactions_database=store.ReactionsDatabase(config.pathways_database_part1)
MemoryError
Ran 186 tests in 46.072s
FAILED (errors=2)