Dear lefse team
Following the lefse tutorial using the data and commands provided there:
lefse-format_input.py hmp_small_aerobiosis.xls hmp_aerobiosis_small.in -c 1 -s 2 -u 3 -o 1000000
run_lefse.py hmp_aerobiosis_small.in hmp_aerobiosis_small.res
plot_res.py hmp_aerobiosis_small.res results/hmp_aerobiosis_small.png
instead of getting a plot that shows the differences between groups I get one which shows the differences between subjects:
Yet if I change the -c, -s and -u such that I would expect it to differentiate beween groups it says there are no significant features found.
I initially suspected that I have an old version of lefse, but running the run_lefse.py -h command it says its version is 1.1.01 and conda installs the exact same version if I specify for it to install the version 1.1.1.
I’m unsure if it’s an error on my part, the program’s or conda’s. I would appreciate any help solving this issue.