The bioBakery help forum

Lefse analysis in R

Hi, there

I’m developing a R package for microbiome marker discovery named microbiomeMarker, and the algorithm from lefse has been integrated to this package.

You can try it out today, if you want run lefse analysis in R. microbiomeMarker is still a newborn, so there may be bugs.

Thanks. Any suggestions and contribution will be highly appreciated.

Hi -
Thanks for the interests and for the package! If you have any LEfSe related questions, please feel free to let us know. If you are interested in additional microbial biomarker testing methods, the group also has the MaAsLin2 method with functionalities such as random effects for longitudinal designs, etc.
Best,
Siyuan