I would like to analyze metagenomic data using PanPhlan. I download panphlan3 from https://github.com/SegataLab/panphlan. But I could not find any installation instructions on https://github.com/SegataLab/panphlan/wiki/Home_3_0#the-panphlan-steps.
I tried to install it by “python setup.py install” and got an error:
Traceback (most recent call last):
File “setup.py”, line 13, in
AttributeError: module ‘setuptools’ has no attribute ‘find_namespace_packages’
I also tried to use the scripts directly under “/panphlan” and found that there was no file named “panphlan_download_pangenome.py” (but it was on the guidance on Github).
I would really appreciate it if you can help me solve these problems or give me some detailed guidance. Thank you so much!