Hi, I received the following error message for my OTU table while formatting. What does it mean? I thought I made an exact txt file for the LEfSe application.
Thank you!
Traceback (most recent call last):
File “/shed_tools/testtoolshed.g2.bx.psu.edu/repos/george-weingart/lefse/a6284ef17bf3/lefse/format_input.py”, line 429, in
Sorry for the late response! If you haven’t resolved this, would you mind sharing the input file? You can also reach me at siyuanma@g.harvard.edu if concerned about data safety.
Hi Saraswati,
I was able to get your data to format/run correctly after deleting an empty line or two at the end of the file. Not sure why that creates problems, but if you delete the empty lines it will run.
I hope that helps, and @Celine maybe something similar is going on with your dataset?
Best,
Meg