I am trying to conda install a specific version of kneaddata to fit into the conda install of the biobaker_workflow. The current workflow seems to have issues with the kneaddata it defaults to - the current biobakery_workflow issue where kneaddata gives it a
--run-trf command that is outdated, so the workflow throws an error and exits the processing.
Here is the code:
conda create -n metagenome conda activate metagenome pip install networkx==1.11 conda config --add channels defaults conda config --add channels bioconda conda config --add channels conda-forge conda config --add channels biobakery conda install -c biobakery biobakery_workflows conda install -c biobakery leveldb conda install -c bioconda/label/cf201901 kneaddata
Currently, the final line does not resolve (conda says
Solving Environment with no end). Is there another way to download and integrate a specific kneaddata version into the workflow?