i have installed humann 3.6.1 by pip install humann --no-binary :all: -i https://pypi.tuna.tsinghua.edu.cn/simple
, but it always run by
RUN MODES
resume = False
verbose = False
bypass prescreen = True
bypass nucleotide index = True
bypass nucleotide search = False
bypass translated search = False
translated search = diamond
threads = 14
my code is humann --input /mnt/qc/MHBA/MHBA1/MHBA1.fastq --output /mnt/gongneng --threads 2 --metaphlan-options="--bowtie2db /mnt/shujuku/humann3/metaphlan --index v30_CHOCOPhlAn_201901" --bypass-nucleotide-index
, and i have set bypass prescreen = False before run humann.