Given the user manual I am a bit confused which file contains final ready-to-use RPKM counts and which file contains raw, unnormalized counts.
If (“wgs” or “fullgenome”)_results.tab contains raw counts, why do I have floating values? I would expect raw counts to be integers?
I am interested in using DESeq2 to search for genes that are differentially present in my disease group. That is why I am looking for raw counts.