Query regarding HMP2 Metatranscriptomics raw files

PRATIK_SHINDE · January 27, 2021, 1:14pm

Hello Sir,
I am doing reanalysis of your metatranscriptomics data. In raw metatranscriptomics files which were passed through quality control pipeline using #infrastructure-and-utilities:kneaddata Kneaddata, The output is concatenated and I want to seperate forward read (#0/1)and reverse read(#0/2). I could not understand how to identify some reads as they only had #0 at the end of the read ID.

Also please tell me if my consideration of forward read and reverse read ID is correct or not
Thank you

sagunmaharjann · January 29, 2021, 4:09pm

Hi Pratik,

Yes, you are right about the forward read and reverse read ID. Can you point me out (link) to the raw metatranscriptomics files which have #0 at the end?

Thanks

PRATIK_SHINDE · February 5, 2021, 2:42pm

Hello Sir,
Thank you for reply, I can tell you one of the sample ID of metatranscriptomics sample, such as CSM7KOUN